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Cell Reports Methods|April 27, 2022
Computational tools for analyzing single-cell data in pluripotent cell differentiation studiesJun Ding, Amir Alavi, Mo R Ebrahimkhani, et al.Nature Communications|April 15, 2022
Interactive single-cell data analysis using CellarEuxhen Hasanaj, Jingtao Wang, Arjun Sarathi, et al.Plos Computational Biology|March 15, 2018
iDREM: Interactive visualization of dynamic regulatory networksJun Ding, James S Hagood, Namasivayam Ambalavanan, et al.Bioinformatics (Oxford, England)|May 8, 2004
Analyzing time series gene expression dataZiv Bar-JosephBMC Bioinformatics|April 7, 2006
STEM: a tool for the analysis of short time series gene expression dataJason Ernst, Ziv Bar-JosephBioinformatics (Oxford, England)|September 3, 2016
Genome wide predictions of miRNA regulation by transcription factorsMatthew Ruffalo, Ziv Bar-JosephBioinformatics (Oxford, England)|December 7, 2014
SMARTS: reconstructing disease response networks from multiple individuals using time series gene expression dataAaron Wise, Ziv Bar-JosephJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|June 15, 2007
A patient-gene model for temporal expression profiles in clinical studiesNaftali Kaminski, Ziv Bar-JosephProceedings of the National Academy of Sciences of the United States of America|December 12, 2019
Deep learning for inferring gene relationships from single-cell expression dataYe Yuan, Ziv Bar-JosephPlos Computational Biology|October 27, 2020
Iterative point set registration for aligning scRNA-seq dataAmir Alavi, Ziv Bar-JosephPageof 385