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Bioinformatics (Oxford, England)|July 2, 2013
Integrating sequence, expression and interaction data to determine condition-specific miRNA regulationHai-Son Le, Ziv Bar-JosephIEEE/ACM Transactions on Computational Biology and Bioinformatics|August 13, 2024
Constrained Pseudo-Time Ordering for Clinical Transcriptomics DataSachin Mathur, Hamid Mattoo, Ziv Bar-JosephBioinformatics (Oxford, England)|April 10, 2009
Cross species analysis of microarray expression dataYong Lu, Peter Huggins, Ziv Bar-JosephBMC Genomics|November 19, 2013
Predicting tissue specific transcription factor binding sitesShan Zhong, Xin He, Ziv Bar-JosephGenome Biology|July 7, 2022
scSTEM: clustering pseudotime ordered single-cell dataQi Song, Jingtao Wang, Ziv Bar-JosephBioinformatics (Oxford, England)|June 28, 2024
Integrating patients in time series clinical transcriptomics dataEuxhen Hasanaj, Sachin Mathur, Ziv Bar-JosephBioinformatics (Oxford, England)|October 8, 2021
Clustering spatial transcriptomics dataHaotian Teng, Ye Yuan, Ziv Bar-JosephBiorxiv : the Preprint Server for Biology|July 3, 2023
SCS: cell segmentation for high-resolution spatial transcriptomicsHao Chen, Dongshunyi Li, Ziv Bar-JosephPlos Computational Biology|December 19, 2014
Multitask learning of signaling and regulatory networks with application to studying human response to fluSiddhartha Jain, Anthony Gitter, Ziv Bar-JosephBioinformatics (Oxford, England)|January 24, 2007
Inferring pairwise regulatory relationships from multiple time series datasetsYanxin Shi, Tom Mitchell, Ziv Bar-JosephPageof 385