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Nucleic Acids Research|October 4, 2017
Using neural networks for reducing the dimensions of single-cell RNA-Seq dataChieh Lin, Siddhartha Jain, Hannah Kim, et al.Plos Computational Biology|December 19, 2014
Multitask learning of signaling and regulatory networks with application to studying human response to fluSiddhartha Jain, Anthony Gitter, Ziv Bar-JosephBioinformatics (Oxford, England)|May 1, 2019
Continuous-state HMMs for modeling time-series single-cell RNA-Seq dataChieh Lin, Ziv Bar-JosephNucleic Acids Research|March 2, 2019
Cell lineage inference from SNP and scRNA-Seq dataJun Ding, Chieh Lin, Ziv Bar-JosephNature Communications|June 18, 2020
Single-cell lineage tracing by integrating CRISPR-Cas9 mutations with transcriptomic dataHamim Zafar, Chieh Lin, Ziv Bar-JosephPlos Computational Biology|February 19, 2020
Inferring TF activation order in time series scRNA-Seq studiesChieh Lin, Jun Ding, Ziv Bar-JosephBioinformatics (Oxford, England)|June 17, 2016
Reconstructing the temporal progression of HIV-1 immune response pathwaysSiddhartha Jain, Joel Arrais, Narasimhan J Venkatachari, et al.Bioinformatics (Oxford, England)|May 8, 2004
Analyzing time series gene expression dataZiv Bar-JosephBMC Bioinformatics|April 7, 2006
STEM: a tool for the analysis of short time series gene expression dataJason Ernst, Ziv Bar-JosephBioinformatics (Oxford, England)|October 17, 2017
MethRaFo: MeDIP-seq methylation estimate using a Random Forest RegressorJun Ding, Ziv Bar-JosephPageof 286