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Journal of Molecular Evolution|July 30, 2021
Spectrum of Protein Location in Proteomes Captures Evolutionary Relationship Between SpeciesValérie Marot-Lassauzaie, Tatyana Goldberg, Jose Juan Almagro Armenteros, et al.Nucleic Acids Research|November 7, 2017
NLSdb-major update for database of nuclear localization signals and nuclear export signalsMichael Bernhofer, Tatyana Goldberg, Silvana Wolf, et al.Journal of Molecular Biology|March 7, 2020
ProNA2020 predicts protein-DNA, protein-RNA, and protein-protein binding proteins and residues from sequenceJiajun Qiu, Michael Bernhofer, Michael Heinzinger, et al.Bioinformatics (Oxford, England)|May 12, 2021
Clustering FunFams using sequence embeddings improves EC purityMaria Littmann, Nicola Bordin, Michael Heinzinger, et al.Journal of Molecular Biology|March 26, 2025
ProtSpace: A Tool for Visualizing Protein SpaceTobias Senoner, Tobias Olenyi, Michael Heinzinger, et al.Journal of Molecular Biology|March 26, 2025
TMVisDB: Annotation and 3D-visualization of Transmembrane ProteinsTobias Olenyi, Céline Marquet, Anastasia Grekova, et al.BMC Bioinformatics|December 19, 2019
Modeling aspects of the language of life through transfer-learning protein sequencesMichael Heinzinger, Ahmed Elnaggar, Yu Wang, et al.Journal of Molecular Biology|February 1, 2026
biocentral: embedding-based protein predictionsSebastian Franz, Tobias Olenyi, Paula Schloetermann, et al.NAR Genomics and Bioinformatics|December 5, 2024
Bilingual language model for protein sequence and structureMichael Heinzinger, Konstantin Weissenow, Joaquin Gomez Sanchez, et al.Protein Engineering, Design & Selection : PEDS|July 5, 2011
Comparison of a molecular dynamics model with the X-ray structure of the N370S acid-beta-glucosidase mutant that causes Gaucher diseaseMarc N Offman, Marcin Krol, Burkhard Rost, et al.Pageof 25