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Virus Evolution|April 11, 2022
Phylogenetic estimation of the viral fitness landscape of HIV-1 set-point viral loadLele Zhao, Chris Wymant, François Blanquart, et al.
Plos Biology|June 13, 2017
Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in EuropeFrançois Blanquart, Chris Wymant, Marion Cornelissen, et al.
Plos Biology|July 14, 2017
Correction: Viral genetic variation accounts for a third of variability in HIV-1 set-point viral load in EuropeFrançois Blanquart, Chris Wymant, Marion Cornelissen, et al.
AIDS Research and Human Retroviruses|May 26, 2017
HIV-1 full-genome phylogenetics of generalized epidemics in sub-Saharan Africa: impact of missing nucleotide characters in next-generation sequencesOliver Ratmann, Chris Wymant, Caroline Colijn, et al.
The Lancet. HIV|January 19, 2020
Quantifying HIV transmission flow between high-prevalence hotspots and surrounding communities: a population-based study in Rakai, UgandaOliver Ratmann, Joseph Kagaayi, Matthew Hall, et al.
Virus Evolution|June 8, 2018
Easy and accurate reconstruction of whole HIV genomes from short-read sequence data with shiverChris Wymant, François Blanquart, Tanya Golubchik, et al.
Science (New York, N.Y.)|February 3, 2022
A highly virulent variant of HIV-1 circulating in the NetherlandsChris Wymant, Daniela Bezemer, François Blanquart, et al.
Plos Biology|January 21, 2025
Viral and immune dynamics of genital human papillomavirus infections in young women with high temporal resolutionNicolas Tessandier, Baptiste Elie, Vanina Boué, et al.
Virus Evolution|December 10, 2025
The genetic architecture of HIV-1 virulenceFrançois Blanquart, Chris Wymant, Matthew Hall, et al.
BMC Bioinformatics|August 15, 2025
HIV-phyloTSI: subtype-independent estimation of time since HIV-1 infection for cross-sectional measures of population incidence using deep sequence dataTanya Golubchik, Lucie Abeler-Dörner, Matthew Hall, et al.
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