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Molecular Immunology|August 23, 2014
Coupling between side chain interactions and binding pocket flexibility in HLA-B*44:02 molecules investigated by molecular dynamics simulationsKatja Ostermeir, Sebastian Springer, Martin ZachariasBiophysical Chemistry|June 16, 2023
Coupling of conformation and CPD damage in nucleosomal DNAAsmar Nayis, Korbinian Liebl, Martin ZachariasNucleic Acids Research|February 22, 2008
Magnitude and direction of DNA bending induced by screw-axis orientation: influence of sequence, mismatches and abasic sitesJeremy Curuksu, Krystyna Zakrzewska, Martin ZachariasBiopolymers|January 26, 2007
Structural flexibility of the nucleosome core particle at atomic resolution studied by molecular dynamics simulationDanilo Roccatano, Andre Barthel, Martin ZachariasJournal of Computational Chemistry|August 6, 2008
Efficient evaluation of sampling quality of molecular dynamics simulations by clustering of dihedral torsion angles and Sammon mappingStephan Frickenhaus, Srinivasaraghavan Kannan, Martin ZachariasProceedings of the National Academy of Sciences of the United States of America|July 25, 2018
Tethered multifluorophore motion reveals equilibrium transition kinetics of single DNA double helicesMatthias Schickinger, Martin Zacharias, Hendrik DietzJournal of Computational Chemistry|May 3, 2017
Fast and accurate grid representations for atom-based docking with partner flexibilitySjoerd J de Vries, Martin ZachariasProteins|February 8, 2017
Monte Carlo replica-exchange based ensemble docking of protein conformationsZhe Zhang, Uwe Ehmann, Martin ZachariasPlos One|December 20, 2012
ATTRACT-EM: a new method for the computational assembly of large molecular machines using cryo-EM mapsSjoerd J de Vries, Martin ZachariasCurrent Protein & Peptide Science|June 13, 2009
Predicting affinity and specificity of antigenic peptide binding to major histocompatibility class I moleculesFlorian Sieker, Andreas May, Martin ZachariasPageof 34