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Genome Biology|August 20, 2002
The salmon genome (and other issues in bioinformatics)Lena E F Milchert, David A Liberles, Arne ElofssonBMC Ecology and Evolution|March 11, 2021
Inferring the number and position of changes in selective regime in a non-equilibrium mutation-selection frameworkAndrew M Ritchie, Tristan L Stark, David A LiberlesJournal of Molecular Biology|June 2, 2012
A phylogenetic analysis of normal modes evolution in enzymes and its relationship to enzyme functionJason Lai, Jing Jin, Jan Kubelka, et al.Proceedings. Biological Sciences|April 15, 2011
Binding constraints on the evolution of enzymes and signalling proteins: the important role of negative pleiotropyDavid A Liberles, Makayla D M Tisdell, Johan A GrahnenJournal of Molecular Evolution|May 11, 2005
Tertiary windowing to detect positive diversifying selectionAnn-Charlotte Berglund, Björn Wallner, Arne Elofsson, et al.BMC Evolutionary Biology|December 9, 2015
A generalized birth and death process for modeling the fates of gene duplicationJing Zhao, Ashley I Teufel, David A Liberles, et al.Journal of Molecular Evolution|January 24, 2021
Ancestral Sequence Reconstruction: From Chemical Paleogenetics to Maximum Likelihood Algorithms and BeyondAvery G A Selberg, Eric A Gaucher, David A LiberlesGenome Biology and Evolution|October 12, 2013
On the need for mechanistic models in computational genomics and metagenomicsDavid A Liberles, Ashley I Teufel, Liang Liu, et al.Systematic Biology|January 7, 2017
ProtASR: An Evolutionary Framework for Ancestral Protein Reconstruction with Selection on Folding StabilityMiguel Arenas, Claudia C Weber, David A Liberles, et al.Gene|May 20, 2008
Characterizing positive and negative selection and their phylogenetic effectsSteven E Massey, Alexander Churbanov, Shruti Rastogi, et al.Pageof 29