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Biorxiv : the Preprint Server for Biology|December 23, 2022
Read2Tree: scalable and accurate phylogenetic trees from raw readsDavid Dylus, Adrian Altenhoff, Sina Majidian, et al.BMC Genomics|November 19, 2020
A generalized Robinson-Foulds distance for labeled treesSamuel Briand, Christophe Dessimoz, Nadia El-Mabrouk, et al.Bioinformatics (Oxford, England)|September 6, 2018
Phylogenetic approaches to identifying fragments of the same gene, with application to the wheat genomeIvana Piližota, Clément-Marie Train, Adrian Altenhoff, et al.Genome Biology and Evolution|May 14, 2024
Matreex: Compact and Interactive Visualization for Scalable Studies of Large Gene FamiliesVictor Rossier, Clement Train, Yannis Nevers, et al.Plos One|March 2, 2013
The impact of gene duplication, insertion, deletion, lateral gene transfer and sequencing error on orthology inference: a simulation studyDaniel A Dalquen, Adrian M Altenhoff, Gaston H Gonnet, et al.Systematic Biology|May 5, 2011
Survey of branch support methods demonstrates accuracy, power, and robustness of fast likelihood-based approximation schemesMaria Anisimova, Manuel Gil, Jean-François Dufayard, et al.Nature Biotechnology|April 20, 2023
Inference of phylogenetic trees directly from raw sequencing reads using Read2TreeDavid Dylus, Adrian Altenhoff, Sina Majidian, et al.Nucleic Acids Research|July 13, 2006
Detecting non-orthology in the COGs database and other approaches grouping orthologs using genome-specific best hitsChristophe Dessimoz, Brigitte Boeckmann, Alexander C J Roth, et al.Plos Computational Biology|May 23, 2012
Resolving the ortholog conjecture: orthologs tend to be weakly, but significantly, more similar in function than paralogsAdrian M Altenhoff, Romain A Studer, Marc Robinson-Rechavi, et al.Molecular Biology and Evolution|April 6, 2021
Ten Years of Collaborative Progress in the Quest for OrthologsBenjamin Linard, Ingo Ebersberger, Shawn E McGlynn, et al.Pageof 19