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HGG Advances|June 12, 2023
Challenges in screening for <i>de novo</i> noncoding variants contributing to genetically complex phenotypesChristopher P Castro, Adam G Diehl, Alan P BoyleNucleic Acids Research|January 24, 2018
Conserved and species-specific transcription factor co-binding patterns drive divergent gene regulation in human and mouseAdam G Diehl, Alan P BoyleBMC Bioinformatics|September 23, 2020
MapGL: inferring evolutionary gain and loss of short genomic sequence features by phylogenetic maximum parsimonyAdam G Diehl, Alan P BoyleBiorxiv : the Preprint Server for Biology|January 30, 2023
LRphase: an efficient method for assigning haplotype identity to long readsMonica J Holmes, Babak Mahjour, Christopher P Castro, et al.Plos One|March 13, 2024
HaplotagLR: An efficient and configurable utility for haplotagging long readsMonica J Holmes, Babak Mahjour, Christopher P Castro, et al.Nature Communications|April 15, 2020
Transposable elements contribute to cell and species-specific chromatin looping and gene regulation in mammalian genomesAdam G Diehl, Ningxin Ouyang, Alan P BoyleBiorxiv : the Preprint Server for Biology|July 3, 2026
Fiber-TEnCATS reveals haplotype-specific chromatin accessibility and DNA methylation at human L1HS lociKatarina Pavlovic, Torrin L McDonald, Adam G Diehl, et al.Genome Research|May 8, 2023
Multiplexed long-read plasmid validation and analysis using OnRampCamille Mumm, Melissa L Drexel, Torrin L McDonald, et al.Nature Communications|June 12, 2021
Cas9 targeted enrichment of mobile elements using nanopore sequencingTorrin L McDonald, Weichen Zhou, Christopher P Castro, et al.Pageof 8