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Journal of Scientific Computing|January 14, 2014
Numerical Methods for Two-Dimensional Stem Cell Tissue GrowthJeremy Ovadia, Qing NieJournal of Computational Physics|June 15, 2010
Compact integration factor methods for complex domains and adaptive mesh refinementXinfeng Liu, Qing NieNature Communications|May 1, 2020
Inferring spatial and signaling relationships between cells from single cell transcriptomic dataZixuan Cang, Qing NieNature Communications|October 17, 2023
NeST: nested hierarchical structure identification in spatial transcriptomic dataBenjamin L Walker, Qing NieBiophysical Journal|April 8, 2014
Interactions and tradeoffs between cell recruitment, proliferation, and differentiation affect CNS regenerationWilliam R Holmes, Qing NieNature Methods|April 6, 2023
Julia for biologistsElisabeth Roesch, Joe G Greener, Adam L MacLean, et al.BMC Systems Biology|August 26, 2010
Ultrasensitive responses and specificity in cell signalingSeth Haney, Lee Bardwell, Qing NiePlos One|August 28, 2009
Incorporating existing network information into gene network inferenceScott Christley, Qing Nie, Xiaohui XieMolecular Systems Biology|November 2, 2022
spliceJAC: transition genes and state-specific gene regulation from single-cell transcriptome dataFederico Bocci, Peijie Zhou, Qing NieFrontiers in Genetics|February 18, 2022
Machine Learning of Single Cell Transcriptomic Data From anti-PD-1 Responders and Non-responders Reveals Distinct Resistance Mechanisms in Skin Cancers and PDACRyan Liu, Emmanuel Dollinger, Qing NiePageof 33