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Bioinformatics (Oxford, England)|January 24, 2007
Multiple alignment by sequence annealingAriel S Schwartz, Lior PachterBioinformatics (Oxford, England)|October 10, 2003
HMM sampling and applications to gene finding and alternative splicingSimon L Cawley, Lior PachterStatistical Applications in Genetics and Molecular Biology|November 23, 2016
Estimating intrinsic and extrinsic noise from single-cell gene expression measurementsAudrey Qiuyan Fu, Lior PachterBulletin of Mathematical Biology|October 12, 2023
Assessing Markovian and Delay Models for Single-Nucleus RNA SequencingGennady Gorin, Shawn Yoshida, Lior PachterGenome Research|March 6, 2003
SLAM: cross-species gene finding and alignment with a generalized pair hidden Markov modelMarina Alexandersson, Simon Cawley, Lior PachterStatistics in Medicine|June 5, 2019
Factor analysis for survival time prediction with informative censoring and diverse covariatesShannon McCurdy, Annette Molinaro, Lior PachterMolecular Biology and Evolution|November 11, 2005
Beyond pairwise distances: neighbor-joining with phylogenetic diversity estimatesDan Levy, Ruriko Yoshida, Lior PachterBulletin of Mathematical Biology|September 18, 2007
Toward the human genotopePeter Huggins, Lior Pachter, Bernd SturmfelsNature Computational Science|September 24, 2024
Biophysically interpretable inference of cell types from multimodal sequencing dataTara Chari, Gennady Gorin, Lior PachterPhysical Review. E|December 23, 2025
Analogies between the virial theorem and the Price equationCatherine Felce, Steinunn Liorsdóttir, Lior PachterPageof 24