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Physical Review. E|February 7, 2025
Biophysical model for joint analysis of chromatin and RNA sequencing dataCatherine Felce, Gennady Gorin, Lior PachterBMC Bioinformatics|December 10, 2013
Fragment assignment in the cloud with eXpress-DAdam Roberts, Harvey Feng, Lior PachterBioinformatics (Oxford, England)|May 11, 2019
The barcode, UMI, set format and BUStoolsPáll Melsted, Vasilis Ntranos, Lior PachterGenome Biology|February 20, 2020
Protein velocity and acceleration from single-cell multiomics experimentsGennady Gorin, Valentine Svensson, Lior PachterBiorxiv : the Preprint Server for Biology|July 15, 2024
Stochastic Modeling of Biophysical Responses to PerturbationTara Chari, Gennady Gorin, Lior PachterBiorxiv : the Preprint Server for Biology|September 25, 2023
Biophysically Interpretable Inference of Cell Types from Multimodal Sequencing DataTara Chari, Gennady Gorin, Lior PachterBiorxiv : the Preprint Server for Biology|December 3, 2025
The Rayleigh Quotient and Contrastive Principal Component Analysis IMaria Carilli, Kayla Jackson, Lior PachterBioinformatics (Oxford, England)|May 17, 2013
Updating RNA-Seq analyses after re-annotationAdam Roberts, Lorian Schaeffer, Lior PachterJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|August 26, 2003
Picking alignments from (Steiner) treesFumei Lam, Marina Alexandersson, Lior PachterPlos One|April 28, 2017
Zika infection of neural progenitor cells perturbs transcription in neurodevelopmental pathwaysLynn Yi, Harold Pimentel, Lior PachterPageof 24