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Biorxiv : the Preprint Server for Biology|April 17, 2026
The Rayleigh Quotient and Contrastive Principal Component Analysis IIKayla Jackson, Maria Carilli, Lior PachterNucleic Acids Research|June 26, 2003
SLAM web server for comparative gene finding and alignmentSimon Cawley, Lior Pachter, Marina AlexanderssonGenome Research|January 17, 2003
AVID: A global alignment programNick Bray, Inna Dubchak, Lior PachterJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|May 23, 2002
Applications of generalized pair hidden Markov models to alignment and gene finding problemsLior Pachter, Marina Alexandersson, Simon CawleyBioinformatics (Oxford, England)|March 21, 2008
Combining statistical alignment and phylogenetic footprinting to detect regulatory elementsRahul Satija, Lior Pachter, Jotun HeinPlos Computational Biology|January 21, 2025
Trajectory inference from single-cell genomics data with a process time modelMeichen Fang, Gennady Gorin, Lior PachterBMC Bioinformatics|August 6, 2011
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genomeBo Li, Colin N DeweyPlos One|January 26, 2019
Deterministic column subset selection for single-cell RNA-SeqShannon R McCurdy, Vasilis Ntranos, Lior PachterBioinformatics (Oxford, England)|March 18, 2009
TopHat: discovering splice junctions with RNA-SeqCole Trapnell, Lior Pachter, Steven L SalzbergBioinformatics (Oxford, England)|April 5, 2024
A machine-readable specification for genomics assaysAli Sina Booeshaghi, Xi Chen, Lior PachterPageof 24