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Bioinformatics (Oxford, England)|September 18, 2008
Specific alignment of structured RNA: stochastic grammars and sequence annealingRobert K Bradley, Lior Pachter, Ian HolmesBMC Bioinformatics|January 14, 2011
Shape-based peak identification for ChIP-SeqValerie Hower, Steven N Evans, Lior PachterBMC Bioinformatics|August 20, 2010
Coverage statistics for sequence census methodsSteven N Evans, Valerie Hower, Lior PachterCell Systems|September 26, 2023
Studying stochastic systems biology of the cell with single-cell genomics dataGennady Gorin, John J Vastola, Lior PachterBiorxiv : the Preprint Server for Biology|June 9, 2023
Studying stochastic systems biology of the cell with single-cell genomics dataGennady Gorin, John J Vastola, Lior PachterBiorxiv : the Preprint Server for Biology|March 30, 2023
A machine-readable specification for genomics assaysA Sina Booeshaghi, Xi Chen, Lior PachterBiorxiv : the Preprint Server for Biology|June 4, 2025
Pseudoassembly of k-mersDelaney K Sullivan, Mayuko Boffelli, Lior PachterSTAR Protocols|August 30, 2021
Annotating cell types in human single-cell RNA-seq data with CellOMatthew N Bernstein, Colin N DeweyBioinformatics (Oxford, England)|July 13, 2013
Inference of alternative splicing from RNA-Seq data with probabilistic splice graphsLaura H LeGault, Colin N DeweyPlos One|June 3, 2020
RefShannon: A genome-guided transcriptome assembler using sparse flow decompositionShunfu Mao, Lior Pachter, David Tse, et al.Pageof 24