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Algorithms for Molecular Biology : AMB|May 2, 2008
On the optimality of the neighbor-joining algorithmKord Eickmeyer, Peter Huggins, Lior Pachter, et al.Biophysical Journal|May 8, 2024
Spectral neural approximations for models of transcriptional dynamicsGennady Gorin, Maria Carilli, Tara Chari, et al.Bioinformatics (Oxford, England)|July 21, 2012
Quantifying uniformity of mapped readsValerie Hower, Richard Starfield, Adam Roberts, et al.Nature Methods|January 22, 2019
A discriminative learning approach to differential expression analysis for single-cell RNA-seqVasilis Ntranos, Lynn Yi, Páll Melsted, et al.Bioinformatics (Oxford, England)|February 20, 2024
Fast and scalable querying of eukaryotic linear motifs with gget elmLaura Luebbert, Chi Hoang, Manjeet Kumar, et al.Plos Genetics|December 20, 2018
Expression reflects population structureBrielin C Brown, Nicolas L Bray, Lior PachterStatistical Applications in Genetics and Molecular Biology|September 4, 2007
The cyclohedron test for finding periodic genes in time course expression studiesJason Morton, Lior Pachter, Anne Shiu, et al.Genome Biology|June 9, 2021
BUTTERFLY: addressing the pooled amplification paradox with unique molecular identifiers in single-cell RNA-seqJohan Gustafsson, Jonathan Robinson, Jens Nielsen, et al.Bioinformatics (Oxford, England)|March 17, 2020
Interpretable factor models of single-cell RNA-seq via variational autoencodersValentine Svensson, Adam Gayoso, Nir Yosef, et al.Statistical Applications in Genetics and Molecular Biology|October 24, 2012
Determining coding CpG islands by identifying regions significant for pattern statistics on Markov chainsMeromit Singer, Alexander Engström, Alexander Schönhuth, et al.Pageof 24