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Angewandte Chemie (International Ed. in English)|August 2, 2017
Model for the Functional Active State of the TS Ribozyme from Molecular SimulationColin S Gaines, Darrin M YorkJournal of the American Chemical Society|February 10, 2016
Ribozyme Catalysis with a Twist: Active State of the Twister Ribozyme in Solution Predicted from Molecular SimulationColin S Gaines, Darrin M YorkACS Catalysis|July 23, 2019
Cleaning Up Mechanistic Debris Generated by Twister Ribozymes Using Computational RNA EnzymologyColin S Gaines, Timothy J Giese, Darrin M YorkRNA (New York, N.Y.)|November 29, 2019
The L-platform/L-scaffold framework: a blueprint for RNA-cleaving nucleic acid enzyme designColin S Gaines, Joseph A Piccirilli, Darrin M YorkACS Physical Chemistry Au|November 30, 2023
Modern Alchemical Free Energy Methods for Drug Discovery ExplainedDarrin M YorkOrganic & Biomolecular Chemistry|April 22, 2022
<i>Who stole the proton?</i> Suspect general base guanine found with a smoking gun in the pistol ribozymeŞölen Ekesan, Darrin M YorkRNA (New York, N.Y.)|August 1, 2019
Molecular simulations of the pistol ribozyme: unifying the interpretation of experimental data and establishing functional links with the hammerhead ribozymeKen Kostenbader, Darrin M YorkProteins|July 29, 2004
Quantum descriptors for biological macromolecules from linear-scaling electronic structure methodsJana Khandogin, Darrin M YorkNucleic Acids Research|September 13, 2019
Dynamical ensemble of the active state and transition state mimic for the RNA-cleaving 8-17 DNAzyme in solutionŞölen Ekesan, Darrin M YorkThe Journal of Physical Chemistry. B|April 20, 2019
Framework for Conducting and Analyzing Crystal Simulations of Nucleic Acids to Aid in Modern Force Field EvaluationŞölen Ekesan, Darrin M YorkPageof 18