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The Journal of Chemical Physics|March 18, 2006
Simple estimation of absolute free energies for biomoleculesF Marty Ytreberg, Daniel M Zuckerman
Proceedings of the National Academy of Sciences of the United States of America|June 12, 2008
A black-box re-weighting analysis can correct flawed simulation dataF Marty Ytreberg, Daniel M Zuckerman
Peerj. Computer Science|January 18, 2021
Implementation of adaptive integration method for free energy calculations in molecular systemsChristopher A Mirabzadeh, F Marty Ytreberg
The Journal of Chemical Physics|July 23, 2004
Single-ensemble nonequilibrium path-sampling estimates of free energy differencesF Marty Ytreberg, Daniel M Zuckerman
Physical Review Letters|February 21, 2006
Resolution exchange simulationEdward Lyman, F Marty Ytreberg, Daniel M Zuckerman
Journal of Chemical Theory and Computation|March 12, 2021
Implementing and Assessing an Alchemical Method for Calculating Protein-Protein Binding Free EnergyDharmeshkumar Patel, Jagdish Suresh Patel, F Marty Ytreberg
Journal of Biological Physics|June 5, 2013
Effects of the binding of calcium ions on the structure and dynamics of the ΦX174 virus investigated using molecular dynamicsJason E Pina, Kuo Hao Lee, F Marty Ytreberg
The Journal of Chemical Physics|November 23, 2006
Comparison of free energy methods for molecular systemsF Marty Ytreberg, Robert H Swendsen, Daniel M Zuckerman
Journal of Chemical Theory and Computation|December 3, 2015
Demonstrated Convergence of the Equilibrium Ensemble for a Fast United-Residue Protein ModelF Marty Ytreberg, Svetlana Kh Aroutiounian, Daniel M Zuckerman
Intrinsically Disordered Proteins|February 25, 2017
Using chemical shifts to generate structural ensembles for intrinsically disordered proteins with converged distributions of secondary structureF Marty Ytreberg, Wade Borcherds, Hongwei Wu, et al.
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