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Communications Biology|August 10, 2019
Hierarchical Hidden Markov models enable accurate and diverse detection of antimicrobial resistance sequencesSteven M Lakin, Alan Kuhnle, Bahar Alipanahi, et al.
Biorxiv : the Preprint Server for Biology|December 22, 2025
vir2vec: A Genome-Wide Viral EmbeddingSimone Rancati, Pablo Arozarena Donelli, Giovanna Nicora, et al.
Gigascience|July 28, 2025
Reducing skin microbiome exposure impacts through swine farm biosecurityIlya B Slizovskiy, Tara N Gaire, Peter M Ferm, et al.
Clinical Pharmacology and Therapeutics|March 13, 2025
Establishment of a Biomarker-Directed Clinical Endpoint Model for Early-Stage Parkinson's Disease PatientsChurni Gupta, Chaejin Kim, Serge Guzy, et al.
Nucleic Acids Research|December 1, 2016
MEGARes: an antimicrobial resistance database for high throughput sequencingSteven M Lakin, Chris Dean, Noelle R Noyes, et al.
Infection Control and Hospital Epidemiology|August 22, 2025
Enhanced barrier precautions to prevent transmission of <i>Staphylococcus aureus</i> and Carbapenem-resistant organisms in nursing home chronic ventilator unitsLyndsay M O'Hara, Michelle Newman, Alison D Lydecker, et al.
Frontiers in Microbiology|November 17, 2025
Characterizing the resistome of <i>Escherichia coli</i> isolated from farmed white-tailed deer (<i>Odocoileus virginianus</i>) in Florida, United StatesAustin C Surphlis, An-Chi Cheng, Morgan C Metrailer, et al.
Applied and Environmental Microbiology|February 14, 2016
Use of Metagenomic Shotgun Sequencing Technology To Detect Foodborne Pathogens within the Microbiome of the Beef Production ChainXiang Yang, Noelle R Noyes, Enrique Doster, et al.
Frontiers in Microbiology|September 27, 2019
Characterization of the Microbial Resistome in Conventional and "Raised Without Antibiotics" Beef and Dairy Production SystemsPablo Rovira, Tim McAllister, Steven M Lakin, et al.
Frontiers in Microbiology|August 15, 2018
Investigating Effects of Tulathromycin Metaphylaxis on the Fecal Resistome and Microbiome of Commercial Feedlot Cattle Early in the Feeding PeriodEnrique Doster, Pablo Rovira, Noelle R Noyes, et al.
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