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Frontiers in Microbiology|March 24, 2023
The <i>K</i>-mer antibiotic resistance gene variant analyzer (KARGVA)Simone Marini, Christina Boucher, Noelle Noyes, et al.BMC Genomics|January 7, 2015
HyDA-Vista: towards optimal guided selection of k-mer size for sequence assemblyBasir Shariat, Narjes Sadat Movahedi, Hamidreza Chitsaz, et al.BMC Systems Biology|April 20, 2018
Counting motifs in dynamic networksKingshuk Mukherjee, Md Mahmudul Hasan, Christina Boucher, et al.Bioinformatics (Oxford, England)|July 7, 2026
RAmpSim: a thermodynamic simulator for hybridization capture in metagenomic sequencingAidan Zhang, Christina Boucher, Noelle Noyes, et al.Biorxiv : the Preprint Server for Biology|December 22, 2025
RAmpSim: A Thermodynamic Simulator for Hybridization Capture in Metagenomic SequencingAidan Zhang, Christina Boucher, Noelle Noyes, et al.Journal of Imaging Informatics in Medicine|March 17, 2026
Automated Prediction of Radiological Protocols Using Retrieval Augmented GenerationConrad Testagrose, Panagiotis Korfiatis, Justin Benfield, et al.Bioinformatics (Oxford, England)|June 15, 2015
Misassembly detection using paired-end sequence reads and optical mapping dataMartin D Muggli, Simon J Puglisi, Roy Ronen, et al.International Symposium on String Processing and Information Retrieval : SPIRE ... : Proceedings. SPIRE (Symposium)|May 14, 2024
Computing the original eBWT faster, simpler, and with less memoryChristina Boucher, Davide Cenzato, Zsuzsanna Lipták, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|January 18, 2022
MONI: A Pangenomic Index for Finding Maximal Exact MatchesMassimiliano Rossi, Marco Oliva, Ben Langmead, et al.Bioinformatics (Oxford, England)|January 31, 2019
Aligning optical maps to de Bruijn graphsKingshuk Mukherjee, Bahar Alipanahi, Tamer Kahveci, et al.Pageof 12