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Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|March 18, 2020
Matching Reads to Many Genomes with the <i>r</i>-IndexTaher Mun, Alan Kuhnle, Christina Boucher, et al.
Briefings in Bioinformatics|February 25, 2022
Towards routine employment of computational tools for antimicrobial resistance determination via high-throughput sequencingSimone Marini, Rodrigo A Mora, Christina Boucher, et al.
International Symposium on String Processing and Information Retrieval : SPIRE ... : Proceedings. SPIRE (Symposium)|August 16, 2024
Data Structures for SMEM-Finding in the PBWTPaola Bonizzoni, Christina Boucher, Davide Cozzi, et al.
Algorithms for Molecular Biology : AMB|April 10, 2024
Pfp-fm: an accelerated FM-indexAaron Hong, Marco Oliva, Dominik Köppl, et al.
Genome Research|December 17, 2020
Data structures based on <i>k</i>-mers for querying large collections of sequencing data setsCamille Marchet, Christina Boucher, Simon J Puglisi, et al.
Frontiers in Microbiology|July 23, 2020
Mobilization of Antibiotic Resistance: Are Current Approaches for Colocalizing Resistomes and Mobilomes Useful?Ilya B Slizovskiy, Kingshuk Mukherjee, Christopher J Dean, et al.
Current Protocols|October 24, 2024
The TELCoMB Protocol for High-Sensitivity Detection of ARG-MGE Colocalizations in Complex Microbial CommunitiesJonathan E Bravo, Ilya Slizovskiy, Nathalie Bonin, et al.
IEEE/ACM Transactions on Computational Biology and Bioinformatics|December 10, 2021
Finding Overlapping Rmaps via ClusteringKingshuk Mukherjee, Daniel Dole-Muinos, Ayomide Ajayi, et al.
Artificial Intelligence in Medicine. Conference on Artificial Intelligence in Medicine (2005- )|September 16, 2025
Comparative Evaluation of Clinical Large Language Models and Machine Learning to Predict Antimicrobial Resistance in Hospital-Onset SepsisScott A Cohen, Ziyi Chen, Jiang Bian, et al.
Frontiers in Genetics|February 8, 2021
Exploring Prediction of Antimicrobial Resistance Based on Protein Solvent Accessibility VariationSimone Marini, Marco Oliva, Ilya B Slizovskiy, et al.
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