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Proceedings of the National Academy of Sciences of the United States of America|November 20, 2020
Event-specific interventions to minimize COVID-19 transmissionPaul Tupper, Himani Boury, Madi Yerlanov, et al.Molecular Biology and Evolution|January 20, 2017
Genomic Infectious Disease Epidemiology in Partially Sampled and Ongoing OutbreaksXavier Didelot, Christophe Fraser, Jennifer Gardy, et al.PLOS Global Public Health|March 24, 2023
The impact of sampling bias on viral phylogeographic reconstructionPengyu Liu, Yexuan Song, Caroline Colijn, et al.Scientific Reports|February 19, 2016
Effects of memory on the shapes of simple outbreak treesGiacomo Plazzotta, Christopher Kwan, Michael Boyd, et al.Systematic Biology|February 16, 2022
Analyzing Phylogenetic Trees with a Tree Lattice Coordinate System and a Graph PolynomialPengyu Liu, Priscila Biller, Matthew Gould, et al.Genome Research|May 22, 2023
A fast and scalable method for inferring phylogenetic networks from trees by aligning lineage taxon stringsLouxin Zhang, Niloufar Abhari, Caroline Colijn, et al.BMC Infectious Diseases|February 19, 2025
Measles in Canada: modelling outbreaks with variable vaccine coverage and interventionsJennifer McNichol, Javad Valizadeh, Samara Chaudhury, et al.BMC Public Health|February 14, 2024
The role of vaccine status homophily in the COVID-19 pandemic: a cross-sectional survey with modellingElisha B Are, Kiffer G Card, Caroline ColijnJournal of the Royal Society, Interface|December 10, 2024
Uncertainty in COVID-19 transmission could undermine our ability to predict long COVIDAlexander B Beams, David J D Earn, Caroline ColijnEpidemics|December 6, 2023
A method to estimate the serial interval distribution under partially-sampled dataKurnia Susvitasari, Paul Tupper, Jessica E Stockdale, et al.Pageof 15