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Journal of Theoretical Biology|November 27, 2022
COVID-19 endgame: From pandemic to endemic? Vaccination, reopening and evolution in low- and high-vaccinated populationsElisha B Are, Yexuan Song, Jessica E Stockdale, et al.Scientific Reports|November 12, 2024
Early prediction of Mycobacterium tuberculosis transmission clusters using supervised learning modelsOmid Gheysar Gharamaleki, Caroline Colijn, Inna Sekirov, et al.Biometrics|February 6, 2023
Spatial modeling of Mycobacterium tuberculosis transmission with dyadic genetic relatedness dataJoshua L Warren, Melanie H Chitwood, Benjamin Sobkowiak, et al.American Journal of Respiratory and Critical Care Medicine|March 29, 2008
Challenges in estimating the total burden of drug-resistant tuberculosisTed Cohen, Caroline Colijn, Abigail Wright, et al.Genome Medicine|December 9, 2014
A phylogeny-based sampling strategy and power calculator informs genome-wide associations study design for microbial pathogensMaha R Farhat, B Jesse Shapiro, Samuel K Sheppard, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|April 30, 2021
Estimating Genetic Similarity Matrices Using PhylogeniesShijia Wang, Shufei Ge, Caroline Colijn, et al.Infectious Disease Modelling|July 11, 2026
Comparing methods to estimate time-varying reproduction numbers using genomic and epidemiological dataElisha B Are, Siavash Riazi, Niloufar Saeidi Mobarakeh, et al.Journal of the Royal Society, Interface|August 25, 2017
Host population structure and treatment frequency maintain balancing selection on drug resistanceSarah Cobey, Edward B Baskerville, Caroline Colijn, et al.Theoretical Population Biology|June 3, 2015
Competition, coinfection and strain replacement in models of Bordetella pertussisEmily J Nicoli, Diepreye Ayabina, Caroline L Trotter, et al.Plos One|June 5, 2008
Are survey-based estimates of the burden of drug resistant TB too low? Insight from a simulation studyTed Cohen, Caroline Colijn, Bryson Finklea, et al.Pageof 15