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Nucleic Acids Research|September 15, 2018
How to fold and protect mitochondrial ribosomal RNA with fewer guaninesMaryam Hosseini, Poorna Roy, Marie Sissler, et al.
Nucleic Acids Research|June 17, 2009
Classification and energetics of the base-phosphate interactions in RNACraig L Zirbel, Judit E Sponer, Jiri Sponer, et al.
Plos Pathogens|April 4, 2024
RNA three-dimensional structure drives the sequence organization of potato spindle tuber viroid quasispeciesJian Wu, Yuhong Zhang, Yuxin Nie, et al.
Nucleic Acids Research|November 5, 2011
Comprehensive survey and geometric classification of base triples in RNA structuresAmal S Abu Almakarem, Anton I Petrov, Jesse Stombaugh, et al.
Methods (San Diego, Calif.)|April 30, 2016
The RNA 3D Motif Atlas: Computational methods for extraction, organization and evaluation of RNA motifsLorena G Parlea, Blake A Sweeney, Maryam Hosseini-Asanjan, et al.
Nucleic Acids Research|July 2, 2015
Identifying novel sequence variants of RNA 3D motifsCraig L Zirbel, James Roll, Blake A Sweeney, et al.
Nucleic Acids Research|June 7, 2015
R3D-2-MSA: the RNA 3D structure-to-multiple sequence alignment serverJamie J Cannone, Blake A Sweeney, Anton I Petrov, et al.
Plos One|October 29, 2015
RNA 3D Modules in Genome-Wide Predictions of RNA 2D StructureCorinna Theis, Craig L Zirbel, Christian Höner Zu Siederdissen, et al.
The Journal of Physical Chemistry. A|September 14, 2011
Noncanonical hydrogen bonding in nucleic acids. Benchmark evaluation of key base-phosphate interactions in folded RNA molecules using quantum-chemical calculations and molecular dynamics simulationsMarie Zgarbová, Petr Jurečka, Pavel Banáš, et al.
Nucleic Acids Research|February 22, 2020
Functional analysis reveals G/U pairs critical for replication and trafficking of an infectious non-coding viroid RNAJian Wu, Cuiji Zhou, James Li, et al.
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