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Nucleic Acids Research|June 26, 2003
REDUCE: An online tool for inferring cis-regulatory elements and transcriptional module activities from microarray dataCrispin Roven, Harmen J BussemakerMolecular Systems Biology|September 25, 2010
Identifying the genetic determinants of transcription factor activityEunjee Lee, Harmen J BussemakerBioinformatics (Oxford, England)|July 1, 2008
Predicting functional transcription factor binding through alignment-free and affinity-based analysis of orthologous promoter sequencesLucas D Ward, Harmen J BussemakerCell Genomics|September 18, 2023
Identifying genetic regulatory variants that affect transcription factor activityXiaoting Li, Tuuli Lappalainen, Harmen J BussemakerNucleic Acids Research|April 12, 2003
Revisiting the codon adaptation index from a whole-genome perspective: analyzing the relationship between gene expression and codon occurrence in yeast using a variety of modelsRonald Jansen, Harmen J Bussemaker, Mark GersteinBMC Genomics|June 21, 2014
Characterizing a collective and dynamic component of chromatin immunoprecipitation enrichment profiles in yeastLucas D Ward, Junbai Wang, Harmen J BussemakerBMC Bioinformatics|April 29, 2004
Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding dataFeng Gao, Barrett C Foat, Harmen J BussemakerProceedings of the National Academy of Sciences of the United States of America|February 26, 2003
Genomewide analysis of Drosophila GAGA factor target genes reveals context-dependent DNA bindingBas van Steensel, Jeffrey Delrow, Harmen J BussemakerBMC Bioinformatics|October 2, 2007
Dissecting complex transcriptional responses using pathway-level scores based on prior informationHarmen J Bussemaker, Lucas D Ward, Andre BoorsmaNucleic Acids Research|October 20, 2007
TransfactomeDB: a resource for exploring the nucleotide sequence specificity and condition-specific regulatory activity of trans-acting factorsBarrett C Foat, Ronald G Tepper, Harmen J BussemakerPageof 8