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Algorithms for Molecular Biology : AMB|January 6, 2010
Efficient algorithms for analyzing segmental duplications with deletions and inversions in genomesCrystal L Kahn, Shay Mozes, Benjamin J RaphaelBioinformatics (Oxford, England)|August 12, 2008
Analysis of segmental duplications via duplication distanceCrystal L Kahn, Benjamin J RaphaelPacific Symposium on Biocomputing. Pacific Symposium on Biocomputing|February 13, 2009
A parsimony approach to analysis of human segmental duplicationsCrystal L Kahn, Benjamin J RaphaelBMC Bioinformatics|January 4, 2013
Reconstructing genome mixtures from partial adjacenciesAhmad Mahmoody, Crystal L Kahn, Benjamin J RaphaelBioinformatics (Oxford, England)|September 9, 2010
Parsimony and likelihood reconstruction of human segmental duplicationsCrystal L Kahn, Borislav H Hristov, Benjamin J RaphaelPlos Computational Biology|January 10, 2013
Chapter 6: Structural variation and medical genomicsBenjamin J RaphaelBioinformatics (Oxford, England)|July 14, 2020
Copy number evolution with weighted aberrations in cancerRon Zeira, Benjamin J RaphaelNature Communications|September 4, 2020
Accurate quantification of copy-number aberrations and whole-genome duplications in multi-sample tumor sequencing dataSimone Zaccaria, Benjamin J RaphaelNature Biotechnology|September 4, 2020
Characterizing allele- and haplotype-specific copy numbers in single cells with CHISELSimone Zaccaria, Benjamin J RaphaelPlos Computational Biology|December 4, 2024
A regression based approach to phylogenetic reconstruction from multi-sample bulk DNA sequencing of tumorsHenri Schmidt, Benjamin J RaphaelPageof 17