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Nucleic Acids Research|October 7, 2011
Clustering RNA structural motifs in ribosomal RNAs using secondary structural alignmentCuncong Zhong, Shaojie ZhangBMC Bioinformatics|September 10, 2013
Efficient alignment of RNA secondary structures using sparse dynamic programmingCuncong Zhong, Shaojie ZhangRNA (New York, N.Y.)|January 18, 2015
RNAMotifScanX: a graph alignment approach for RNA structural motif identificationCuncong Zhong, Shaojie ZhangIscience|July 5, 2019
Accurate and Efficient Mapping of the Cross-Linked microRNA-mRNA Duplex ReadsCuncong Zhong, Shaojie ZhangJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|April 3, 2014
Simultaneous folding of alternative RNA structures with mutual constraints: an application to next-generation sequencing-based RNA structure probingCuncong Zhong, Shaojie ZhangInternational Journal of Bioinformatics Research and Applications|July 4, 2014
Discovering non-coding RNA elements in Drosophila 3' untranslated regionsCuncong Zhong, Justen Andrews, Shaojie ZhangNucleic Acids Research|August 11, 2010
RNAMotifScan: automatic identification of RNA structural motifs using secondary structural alignmentCuncong Zhong, Haixu Tang, Shaojie ZhangBMC Bioinformatics|September 26, 2014
ProbeAlign: incorporating high-throughput sequencing-based structure probing information into ncRNA homology searchPing Ge, Cuncong Zhong, Shaojie ZhangInternational Journal of Bioinformatics Research and Applications|July 4, 2014
Finding consensus stable local optimal structures for aligned RNA sequences and its application to discovering riboswitch elementsYuan Li, Cuncong Zhong, Shaojie ZhangNucleic Acids Research|March 14, 2018
De novo discovery of structural motifs in RNA 3D structures through clusteringPing Ge, Shahidul Islam, Cuncong Zhong, et al.Pageof 30