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Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|June 19, 2007
Confounding factors in HGT detection: statistical error, coalescent effects, and multiple solutionsCuong Than, Derek Ruths, Hideki Innan, et al.BMC Bioinformatics|July 30, 2008
PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationshipsCuong Than, Derek Ruths, Luay NakhlehInternational Journal of Bioinformatics Research and Applications|December 1, 2007
Recombination and phylogeny: effects and detectionDerek Ruths, Luay NakhlehPlos Computational Biology|September 15, 2009
Species tree inference by minimizing deep coalescencesCuong Than, Luay NakhlehBioinformatics (Oxford, England)|March 18, 2009
GS2: an efficiently computable measure of GO-based similarity of gene setsTroy Ruths, Derek Ruths, Luay NakhlehBMC Systems Biology|August 21, 2008
Rapidly exploring structural and dynamic properties of signaling networks using PathwayOracleDerek Ruths, Luay Nakhleh, Prahlad T RamSystematic Biology|January 21, 2011
Coalescent histories on phylogenetic networks and detection of hybridization despite incomplete lineage sortingYun Yu, Cuong Than, James H Degnan, et al.Molecular Biology and Evolution|October 20, 2011
Population genomics in bacteria: a case study of Staphylococcus aureusShohei Takuno, Tomoyuki Kado, Ryuichi P Sugino, et al.Plos Computational Biology|May 9, 2008
The signaling petri net-based simulator: a non-parametric strategy for characterizing the dynamics of cell-specific signaling networksDerek Ruths, Melissa Muller, Jen-Te Tseng, et al.Trends in Ecology & Evolution|October 8, 2013
Computational approaches to species phylogeny inference and gene tree reconciliationLuay NakhlehPageof 20