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Plos Computational Biology|September 15, 2009
Species tree inference by minimizing deep coalescencesCuong Than, Luay NakhlehBMC Bioinformatics|July 30, 2008
PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationshipsCuong Than, Derek Ruths, Luay NakhlehJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|June 19, 2007
Confounding factors in HGT detection: statistical error, coalescent effects, and multiple solutionsCuong Than, Derek Ruths, Hideki Innan, et al.Systematic Biology|January 21, 2011
Coalescent histories on phylogenetic networks and detection of hybridization despite incomplete lineage sortingYun Yu, Cuong Than, James H Degnan, et al.Trends in Ecology & Evolution|October 8, 2013
Computational approaches to species phylogeny inference and gene tree reconciliationLuay NakhlehIEEE/ACM Transactions on Computational Biology and Bioinformatics|May 1, 2010
A metric on the space of reduced phylogenetic networksLuay NakhlehInternational Journal of Bioinformatics Research and Applications|December 1, 2007
Recombination and phylogeny: effects and detectionDerek Ruths, Luay NakhlehProceedings of the National Academy of Sciences of the United States of America|April 24, 2013
Neutral forces acting on intragenomic variability shape the Escherichia coli regulatory network topologyTroy Ruths, Luay NakhlehBioinformatics (Oxford, England)|May 10, 2011
The strength of chemical linkage as a criterion for pruning metabolic graphsWanding Zhou, Luay NakhlehBMC Genomics|October 10, 2015
A maximum pseudo-likelihood approach for phylogenetic networksYun Yu, Luay NakhlehPageof 9