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Proceedings of the National Academy of Sciences of the United States of America|March 16, 2007
Loss of a histone deacetylase dramatically alters the genomic distribution of Spo11p-catalyzed DNA breaks in Saccharomyces cerevisiaePiotr A Mieczkowski, Margaret Dominska, Michael J Buck, et al.
Genome Research|December 21, 2006
FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatinPaul G Giresi, Jonghwan Kim, Ryan M McDaniell, et al.
Genome Research|October 21, 2006
Whole-genome comparison of Leu3 binding in vitro and in vivo reveals the importance of nucleosome occupancy in target site selectionXiao Liu, Cheol-Koo Lee, Joshua A Granek, et al.
Genome Biology|July 27, 2011
ZINBA integrates local covariates with DNA-seq data to identify broad and narrow regions of enrichment, even within amplified genomic regionsNaim U Rashid, Paul G Giresi, Joseph G Ibrahim, et al.
Human Molecular Genetics|September 18, 2010
Allele-specific and heritable chromatin signatures in humansEwan Birney, Jason D Lieb, Terrence S Furey, et al.
Plos Genetics|April 16, 2015
Asymmetric transcript discovery by RNA-seq in C. elegans blastomeres identifies neg-1, a gene important for anterior morphogenesisErin Osborne Nishimura, Jay C Zhang, Adam D Werts, et al.
Nature|April 14, 2012
Genome-wide protein-DNA binding dynamics suggest a molecular clutch for transcription factor functionColin R Lickwar, Florian Mueller, Sean E Hanlon, et al.
The Journal of Biological Chemistry|January 4, 2014
Gene model 129 (Gm129) encodes a novel transcriptional repressor that modulates circadian gene expressionYunus Annayev, Sheera Adar, Yi-Ying Chiou, et al.
Plos One|May 10, 2011
The stress response factors Yap6, Cin5, Phd1, and Skn7 direct targeting of the conserved co-repressor Tup1-Ssn6 in S. cerevisiaeSean E Hanlon, Jason M Rizzo, Deirdre C Tatomer, et al.
Nature Genetics|February 13, 2007
X chromosome repression by localization of the C. elegans dosage compensation machinery to sites of transcription initiationSevinc Ercan, Paul G Giresi, Christina M Whittle, et al.
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