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Annual Review of Cell and Developmental Biology|September 11, 2015
Comparative analysis of gene regulatory networks: from network reconstruction to evolutionDawn Thompson, Aviv Regev, Sushmita Roy
Arxiv|July 10, 2026
scMTNI: Leveraging cellular trajectory and context to infer dynamic GRNs from single-cell multi-omics dataSuvojit Hazra, Chandrani Kumari, Sushmita Roy
Genome Biology|May 29, 2016
A multi-task graph-clustering approach for chromosome conformation capture data sets identifies conserved modules of chromosomal interactionsAlireza Fotuhi Siahpirani, Ferhat Ay, Sushmita Roy
Bioinformatics (Oxford, England)|May 10, 2011
A multiple network learning approach to capture system-wide condition-specific responsesSushmita Roy, Margaret Werner-Washburne, Terran Lane
Bioinformatics (Oxford, England)|April 11, 2008
A system for generating transcription regulatory networks with combinatorial control of transcriptionSushmita Roy, Margaret Werner-Washburne, Terran Lane
Current Opinion in Biotechnology|April 27, 2016
Network-based approaches for analysis of complex biological systemsDeborah Chasman, Alireza Fotuhi Siahpirani, Sushmita Roy
Proceedings of the ... International Conference on Machine Learning. International Conference on Machine Learning|September 28, 2011
Learning structurally consistent undirected probabilistic graphical modelsSushmita Roy, Terran Lane, Margaret Werner-Washburne
Methods in Molecular Biology (Clifton, N.J.)|December 15, 2018
Integrative Approaches for Inference of Genome-Scale Gene Regulatory NetworksAlireza Fotuhi Siahpirani, Deborah Chasman, Sushmita Roy
Sub-Cellular Biochemistry|November 19, 2011
Aging and the survival of quiescent and non-quiescent cells in yeast stationary-phase culturesM Werner-Washburne, Sushmita Roy, George S Davidson
Rapid Communications in Mass Spectrometry : RCM|February 22, 2002
New algorithms for processing and peak detection in liquid chromatography/mass spectrometry dataCurtis A Hastings, Scott M Norton, Sushmita Roy
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