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Damla Senol Cali

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Briefings in Bioinformatics|April 5, 2018
Nanopore sequencing technology and tools for genome assembly: computational analysis of the current state, bottlenecks and future directionsDamla Senol Cali, Jeremie S Kim, Saugata Ghose, et al.
Bioinformatics (Oxford, England)|March 24, 2023
Scrooge: a fast and memory-frugal genomic sequence aligner for CPUs, GPUs, and ASICsJoël Lindegger, Damla Senol Cali, Mohammed Alser, et al.
Bioinformatics (Oxford, England)|August 17, 2022
FastRemap: a tool for quickly remapping reads between genome assembliesJeremie S Kim, Can Firtina, Meryem Banu Cavlak, et al.
Bioinformatics (Oxford, England)|March 14, 2020
Apollo: a sequencing-technology-independent, scalable and accurate assembly polishing algorithmCan Firtina, Jeremie S Kim, Mohammed Alser, et al.
IEEE/ACM Transactions on Computational Biology and Bioinformatics|August 19, 2024
AirLift: A Fast and Comprehensive Technique for Remapping Alignments between Reference GenomesJeremie S Kim, Can Firtina, Meryem Banu Cavlak, et al.
BMC Genomics|May 17, 2018
GRIM-Filter: Fast seed location filtering in DNA read mapping using processing-in-memory technologiesJeremie S Kim, Damla Senol Cali, Hongyi Xin, et al.
NAR Genomics and Bioinformatics|January 23, 2023
BLEND: a fast, memory-efficient and accurate mechanism to find fuzzy seed matches in genome analysisCan Firtina, Jisung Park, Mohammed Alser, et al.
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Showing results (1-10 of 7) with videos related to

Sort By:
Pageof 1
Briefings in Bioinformatics|April 5, 2018
Nanopore sequencing technology and tools for genome assembly: computational analysis of the current state, bottlenecks and future directionsDamla Senol Cali, Jeremie S Kim, Saugata Ghose, et al.
Bioinformatics (Oxford, England)|March 24, 2023
Scrooge: a fast and memory-frugal genomic sequence aligner for CPUs, GPUs, and ASICsJoël Lindegger, Damla Senol Cali, Mohammed Alser, et al.
Bioinformatics (Oxford, England)|August 17, 2022
FastRemap: a tool for quickly remapping reads between genome assembliesJeremie S Kim, Can Firtina, Meryem Banu Cavlak, et al.
Bioinformatics (Oxford, England)|March 14, 2020
Apollo: a sequencing-technology-independent, scalable and accurate assembly polishing algorithmCan Firtina, Jeremie S Kim, Mohammed Alser, et al.
IEEE/ACM Transactions on Computational Biology and Bioinformatics|August 19, 2024
AirLift: A Fast and Comprehensive Technique for Remapping Alignments between Reference GenomesJeremie S Kim, Can Firtina, Meryem Banu Cavlak, et al.
BMC Genomics|May 17, 2018
GRIM-Filter: Fast seed location filtering in DNA read mapping using processing-in-memory technologiesJeremie S Kim, Damla Senol Cali, Hongyi Xin, et al.
NAR Genomics and Bioinformatics|January 23, 2023
BLEND: a fast, memory-efficient and accurate mechanism to find fuzzy seed matches in genome analysisCan Firtina, Jisung Park, Mohammed Alser, et al.
Pageof 1