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Genome Biology|July 29, 2020
Bovine breed-specific augmented reference graphs facilitate accurate sequence read mapping and unbiased variant discoveryDanang Crysnanto, Hubert Pausch
BMC Evolutionary Biology|May 10, 2019
Widespread gene duplication and adaptive evolution in the RNA interference pathways of the Drosophila obscura groupDanang Crysnanto, Darren J Obbard
Genetics, Selection, Evolution : GSE|May 17, 2019
Accurate sequence variant genotyping in cattle using variation-aware genome graphsDanang Crysnanto, Christine Wurmser, Hubert Pausch
BMC Genomics|January 10, 2020
Assessing genomic diversity and signatures of selection in Original Braunvieh cattle using whole-genome sequencing dataMeenu Bhati, Naveen Kumar Kadri, Danang Crysnanto, et al.
Proceedings of the National Academy of Sciences of the United States of America|May 11, 2021
Novel functional sequences uncovered through a bovine multiassembly graphDanang Crysnanto, Alexander S Leonard, Zih-Hua Fang, et al.
Genome Biology|May 22, 2023
Graph construction method impacts variation representation and analyses in a bovine super-pangenomeAlexander S Leonard, Danang Crysnanto, Xena M Mapel, et al.
BMC Genomics|April 22, 2021
Characterization of a haplotype-reference panel for genotyping by low-pass sequencing in Swiss Large White pigsAdéla Nosková, Meenu Bhati, Naveen Kumar Kadri, et al.
Nature Communications|May 31, 2022
Structural variant-based pangenome construction has low sensitivity to variability of haplotype-resolved bovine assembliesAlexander S Leonard, Danang Crysnanto, Zih-Hua Fang, et al.
NAR Molecular Medicine|April 1, 2026
Integrating transcriptomics and proteomics to assess antisense oligonucleotide safety and efficacy: a time-resolved approachDaniel van Leeuwen, Miriam Cipullo, Eleanor C Williams, et al.
Plos Genetics|May 15, 2020
Activation of cryptic splicing in bovine WDR19 is associated with reduced semen quality and male fertilityMaya Hiltpold, Guanglin Niu, Naveen Kumar Kadri, et al.
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