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Methods in Molecular Biology (Clifton, N.J.)|May 20, 2014
Identification of mutations in laboratory-evolved microbes from next-generation sequencing data using breseqDaniel E Deatherage, Jeffrey E BarrickCell Systems|September 18, 2021
High-throughput characterization of mutations in genes that drive clonal evolution using multiplex adaptome capture sequencingDaniel E Deatherage, Jeffrey E BarrickFrontiers in Genetics|February 6, 2015
Detecting rare structural variation in evolving microbial populations from new sequence junctions using breseqDaniel E Deatherage, Charles C Traverse, Lindsey N Wolf, et al.Nature Communications|December 22, 2019
Evolution of satellite plasmids can prolong the maintenance of newly acquired accessory genes in bacteriaXue Zhang, Daniel E Deatherage, Hao Zheng, et al.Nucleic Acids Research|August 24, 2018
Directed evolution of Escherichia coli with lower-than-natural plasmid mutation ratesDaniel E Deatherage, Dacia Leon, Álvaro E Rodriguez, et al.Proceedings of the National Academy of Sciences of the United States of America|January 1, 2014
Recursive genomewide recombination and sequencing reveals a key refinement step in the evolution of a metabolic innovation in Escherichia coliErik M Quandt, Daniel E Deatherage, Andrew D Ellington, et al.Proceedings of the National Academy of Sciences of the United States of America|February 17, 2017
Specificity of genome evolution in experimental populations of <i>Escherichia coli</i> evolved at different temperaturesDaniel E Deatherage, Jamie L Kepner, Albert F Bennett, et al.Microorganisms|February 13, 2021
Global Transcriptional Response of <i>Methylorubrum extorquens</i> to Formaldehyde Stress Expands the Role of EfgA and Is Distinct from Antibiotic Translational InhibitionJannell V Bazurto, Siavash Riazi, Simon D'Alton, et al.Methods in Molecular Biology (Clifton, N.J.)|April 22, 2009
Predicting riboswitch regulation on a genomic scaleJeffrey E BarrickBMC Genomics|November 30, 2014
Identifying structural variation in haploid microbial genomes from short-read resequencing data using breseqJeffrey E Barrick, Geoffrey Colburn, Daniel E Deatherage, et al.Pageof 14