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Proceedings. IEEE Computational Systems Bioinformatics Conference|February 2, 2006
Efficient algorithms and software for detection of full-length LTR retrotransposonsAnantharaman Kalyanaraman, Srinivas AluruIEEE/ACM Transactions on Computational Biology and Bioinformatics|January 28, 2020
An Ultra-Fast and Parallelizable Algorithm for Finding k-Mismatch Shortest Unique SubstringsDaniel R Allen, Sharma V Thankachan, Bojian XuJournal of Computational Biology : a Journal of Computational Molecular Cell Biology|March 7, 2025
Disambiguating a Soft Metagenomic ClusteringRahul Nihalani, Jaroslaw Zola, Srinivas AluruJournal of Bioinformatics and Computational Biology|February 23, 2013
Large-scale metagenomic sequence clustering on map-reduce clustersXiao Yang, Jaroslaw Zola, Srinivas AluruBioinformatics (Oxford, England)|July 12, 2021
A variant selection framework for genome graphsChirag Jain, Neda Tavakoli, Srinivas AluruMicroarrays (Basel, Switzerland)|September 23, 2016
Microarray Data Processing Techniques for Genome-Scale Network Inference from Large Public RepositoriesSriram Chockalingam, Maneesha Aluru, Srinivas AluruBMC Genomics|December 22, 2020
A comprehensive evaluation of long read error correction methodsHaowen Zhang, Chirag Jain, Srinivas AluruIEEE/ACM Transactions on Computational Biology and Bioinformatics|August 4, 2018
Fast de Bruijn Graph Compaction in Distributed Memory EnvironmentsTony Pan, Rahul Nihalani, Srinivas AluruIEEE/ACM Transactions on Computational Biology and Bioinformatics|October 10, 2015
Parallel Mutual Information Based Construction of Genome-Scale Networks on the Intel® Xeon Phi™ CoprocessorSanchit Misra, Kiran Pamnany, Srinivas AluruPageof 7