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Bioinformatics (Oxford, England)|September 14, 2010
Reptile: representative tiling for short read error correctionXiao Yang, Karin S Dorman, Srinivas AluruBioinformatics (Oxford, England)|February 22, 2025
SCEMENT: scalable and memory efficient integration of large-scale single-cell RNA-sequencing dataSriram P Chockalingam, Maneesha Aluru, Srinivas AluruBMC Bioinformatics|February 24, 2011
Repeat-aware modeling and correction of short read errorsXiao Yang, Srinivas Aluru, Karin S DormanBriefings in Bioinformatics|April 12, 2012
A survey of error-correction methods for next-generation sequencingXiao Yang, Sriram P Chockalingam, Srinivas AluruBMC Systems Biology|August 5, 2016
SNVSniffer: an integrated caller for germline and somatic single-nucleotide and indel mutationsYongchao Liu, Martin Loewer, Srinivas Aluru, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|January 20, 2022
GRNUlar: A Deep Learning Framework for Recovering Single-Cell Gene Regulatory NetworksHarsh Shrivastava, Xiuwei Zhang, Le Song, et al.Nucleic Acids Research|May 29, 2003
Efficient clustering of large EST data sets on parallel computersAnantharaman Kalyanaraman, Srinivas Aluru, Suresh Kothari, et al.Proceedings. IEEE Computational Systems Bioinformatics Conference|February 2, 2006
Consensus genetic maps: a graph theoretic approachBenjamin N Jackson, Srinivas Aluru, Patrick S SchnableProceedings. IEEE Computational Systems Bioinformatics Conference|February 2, 2006
Space-conserving optimal DNA-protein alignmentPang Ko, Mahesh Narayanan, Anantharaman Kalyanaraman, et al.BMC Bioinformatics|February 12, 2009
Parallel short sequence assembly of transcriptomesBenjamin G Jackson, Patrick S Schnable, Srinivas AluruPageof 7