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Research Square|April 8, 2025
JUNIPER: Reconstructing Transmission Events from Next-Generation Sequencing Data at ScaleIvan Specht, Gage K Moreno, Taylor Brock-Fisher, et al.
Proceedings of the National Academy of Sciences of the United States of America|July 25, 2012
Sequence-based association and selection scans identify drug resistance loci in the Plasmodium falciparum malaria parasiteDaniel J Park, Amanda K Lukens, Daniel E Neafsey, et al.
Medrxiv : the Preprint Server for Health Sciences|August 8, 2025
Real-time, multi-pathogen wastewater genomic surveillance with Freyja 2Joshua I Levy, Praneeth Gangavarapu, Dylan A Pilz, et al.
Medrxiv : the Preprint Server for Health Sciences|March 17, 2025
JUNIPER: Reconstructing Transmission Events from Next-Generation Sequencing Data at ScaleIvan Specht, Gage K Moreno, Taylor Brock-Fisher, et al.
Scientific Reports|May 15, 2021
Genomic investigation of a dengue virus outbreak in Thiès, Senegal, in 2018Amy Gaye, Tolla Ndiaye, Mouhamad Sy, et al.
Biorxiv : the Preprint Server for Biology|March 24, 2021
DNA spike-ins enable confident interpretation of SARS-CoV-2 genomic data from amplicon-based sequencingKim A Lagerborg, Erica Normandin, Matthew R Bauer, et al.
Malaria Journal|April 2, 2020
Amplicon deep sequencing of kelch13 in Plasmodium falciparum isolates from SenegalAmy Gaye, Mouhamad Sy, Tolla Ndiaye, et al.
Cancer Epidemiology, Biomarkers & Prevention : a Publication of the American Association for Cancer Research, Cosponsored by the American Society of Preventive Oncology|August 20, 2016
Use of a Novel Nonparametric Version of DEPTH to Identify Genomic Regions Associated with Prostate Cancer RiskRobert J MacInnis, Daniel F Schmidt, Enes Makalic, et al.
Cell|February 19, 2013
Identifying recent adaptations in large-scale genomic dataSharon R Grossman, Kristian G Andersen, Ilya Shlyakhter, et al.
Emerging Infectious Diseases|June 17, 2015
Monitoring of Ebola Virus Makona Evolution through Establishment of Advanced Genomic Capability in LiberiaJeffrey R Kugelman, Michael R Wiley, Suzanne Mate, et al.
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