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The Journal of Physical Chemistry. B|December 16, 2016
Hysteresis and the Cholesterol Dependent Phase Transition in Binary Lipid Mixtures with the Martini ModelClement Arnarez, Alexis Webb, Eric Rouvière, et al.Faraday Discussions|February 18, 2010
Hierarchical coarse-graining strategy for protein-membrane systems to access mesoscopic scalesGary S Ayton, Edward Lyman, Gregory A VothProtein Science : a Publication of the Protein Society|August 6, 2026
Predicting membrane protein localization by deep learning on structure and chemistryBivek Pokhrel, Christian Munley, Miguel Pedraza, et al.Journal of Computational Chemistry|June 9, 2009
Absolute free energies estimated by combining precalculated molecular fragment librariesXin Zhang, Artem B Mamonov, Daniel M ZuckermanArxiv|August 1, 2026
Markov state models revisited: Principles and algorithms for unbiased observablesDavid Aristoff, Robert J Webber, Daniel M ZuckermanJournal of Chemical Theory and Computation|June 25, 2016
Accurate Estimation of Protein Folding and Unfolding Times: Beyond Markov State ModelsErnesto Suárez, Joshua L Adelman, Daniel M ZuckermanThe Journal of Chemical Physics|March 3, 2007
Transition-event durations in one-dimensional activated processesBin W Zhang, David Jasnow, Daniel M ZuckermanJournal of Computational Chemistry|August 25, 2010
Rapid sampling of all-atom peptides using a library-based polymer-growth approachArtem B Mamonov, Xin Zhang, Daniel M ZuckermanThe Journal of Physical Chemistry. B|April 13, 2010
Efficient equilibrium sampling of all-atom peptides using library-based Monte CarloYing Ding, Artem B Mamonov, Daniel M ZuckermanThe Journal of Chemical Physics|July 10, 2010
Steady-state simulations using weighted ensemble path samplingDivesh Bhatt, Bin W Zhang, Daniel M ZuckermanPageof 16