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Journal of Computational Chemistry|March 10, 2011
Extending fragment-based free energy calculations with library Monte Carlo simulation: annealing in interaction spaceSteven Lettieri, Artem B Mamonov, Daniel M ZuckermanBiophysical Journal|October 28, 2020
Should Virus Capsids Assemble Perfectly? Theory and Observation of DefectsJustin Spiriti, James F Conway, Daniel M ZuckermanThe Journal of Chemical Physics|February 9, 2010
The "weighted ensemble" path sampling method is statistically exact for a broad class of stochastic processes and binning proceduresBin W Zhang, David Jasnow, Daniel M ZuckermanProceedings of the National Academy of Sciences of the United States of America|November 7, 2007
Efficient and verified simulation of a path ensemble for conformational change in a united-residue model of calmodulinBin W Zhang, David Jasnow, Daniel M ZuckermanThe Journal of Chemical Physics|August 24, 2018
Preface: Special Topic on Enhanced Sampling for Molecular SystemsAlessandro Laio, Athanassios Z Panagiotopoulos, Daniel M ZuckermanThe Journal of Chemical Physics|December 3, 2008
Reconstructing atomistic detail for coarse-grained models with resolution exchangePu Liu, Qiang Shi, Edward Lyman, et al.Biophysical Journal|April 2, 2026
Long wavelength lipid bilayer undulation spectrum by all-atom simulationDiego L Velasco-González, Alexander J Sodt, Edward LymanCurrent Opinion in Structural Biology|December 17, 2016
Path-sampling strategies for simulating rare events in biomolecular systemsLillian T Chong, Ali S Saglam, Daniel M ZuckermanBiophysical Journal|March 15, 2018
Escape of a Small Molecule from Inside T4 Lysozyme by Multiple PathwaysAriane Nunes-Alves, Daniel M Zuckerman, Guilherme Menegon ArantesJournal of Chemical Theory and Computation|December 3, 2015
Demonstrated Convergence of the Equilibrium Ensemble for a Fast United-Residue Protein ModelF Marty Ytreberg, Svetlana Kh Aroutiounian, Daniel M ZuckermanPageof 16