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The Journal of Chemical Physics|February 9, 2010
The "weighted ensemble" path sampling method is statistically exact for a broad class of stochastic processes and binning proceduresBin W Zhang, David Jasnow, Daniel M ZuckermanProceedings of the National Academy of Sciences of the United States of America|November 7, 2007
Efficient and verified simulation of a path ensemble for conformational change in a united-residue model of calmodulinBin W Zhang, David Jasnow, Daniel M ZuckermanThe Journal of Chemical Physics|August 24, 2018
Preface: Special Topic on Enhanced Sampling for Molecular SystemsAlessandro Laio, Athanassios Z Panagiotopoulos, Daniel M ZuckermanLiving Journal of Computational Molecular Science|May 13, 2020
A Suite of Tutorials for the WESTPA Rare-Events Sampling Software [Article v1.0]Anthony T Bogetti, Barmak Mostofian, Alex Dickson, et al.Chemical Science|January 5, 2024
Effects of altered backbone composition on the folding kinetics and mechanism of an ultrafast-folding proteinJacqueline R Santhouse, Jeremy M G Leung, Lillian T Chong, et al.Chemical Science|November 2, 2022
Implications of the unfolded state in the folding energetics of heterogeneous-backbone protein mimeticsJacqueline R Santhouse, Jeremy M G Leung, Lillian T Chong, et al.Journal of Chemical Theory and Computation|December 3, 2015
Demonstrated Convergence of the Equilibrium Ensemble for a Fast United-Residue Protein ModelF Marty Ytreberg, Svetlana Kh Aroutiounian, Daniel M ZuckermanBiophysical Journal|March 15, 2018
Escape of a Small Molecule from Inside T4 Lysozyme by Multiple PathwaysAriane Nunes-Alves, Daniel M Zuckerman, Guilherme Menegon ArantesThe Journal of Chemical Physics|November 23, 2006
Comparison of free energy methods for molecular systemsF Marty Ytreberg, Robert H Swendsen, Daniel M ZuckermanBiochemistry|November 3, 2012
The native GCN4 leucine-zipper domain does not uniquely specify a dimeric oligomerization stateKaylyn M Oshaben, Reza Salari, Darrell R McCaslin, et al.Pageof 15