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Biorxiv : the Preprint Server for Biology|December 11, 2023
Minimizing Reference Bias with an Impute-First ApproachKavya Vaddadi, Taher Mun, Ben LangmeadGenome Biology|November 16, 2014
Lighter: fast and memory-efficient sequencing error correction without countingLi Song, Liliana Florea, Ben LangmeadCell Reports Methods|May 2, 2025
IGLoo enables comprehensive analysis and assembly of immunoglobulin heavy-chain loci in lymphoblastoid cell lines using PacBio high-fidelity readsMao-Jan Lin, Ben Langmead, Yana SafonovaGenome Biology|December 19, 2018
FORGe: prioritizing variants for graph genomesJacob Pritt, Nae-Chyun Chen, Ben LangmeadCurrent Protocols in Bioinformatics|September 6, 2012
Genotyping in the cloud with CrossbowJames Gurtowski, Michael C Schatz, Ben LangmeadGenome Biology|November 30, 2019
Improved metagenomic analysis with Kraken 2Derrick E Wood, Jennifer Lu, Ben LangmeadGenome Research|August 25, 2025
Robust 16S rRNA classification based on a compressed LCA indexOmar Y Ahmed, Christina Boucher, Ben LangmeadBiorxiv : the Preprint Server for Biology|August 2, 2024
IGLoo: Profiling the Immunoglobulin Heavy chain locus in Lymphoblastoid Cell Lines with PacBio High-Fidelity Sequencing readsMao-Jan Lin, Ben Langmead, Yana SafonovaBiorxiv : the Preprint Server for Biology|February 13, 2023
DandD: efficient measurement of sequence growth and similarityJessica K Bonnie, Omar Ahmed, Ben LangmeadNature Methods|March 10, 2015
HISAT: a fast spliced aligner with low memory requirementsDaehwan Kim, Ben Langmead, Steven L SalzbergPageof 13