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Bioinformatics (Oxford, England)|October 3, 2017
Snaptron: querying splicing patterns across tens of thousands of RNA-seq samplesChristopher Wilks, Phani Gaddipati, Abhinav Nellore, et al.Biorxiv : the Preprint Server for Biology|August 12, 2025
Quality control of single-cell ATAC-seq data without peak calling using ChromapOmar Ahmed, Haowen Zhang, Ben Langmead, et al.Journal of Computational Biology : a Journal of Computational Molecular Cell Biology|December 5, 2025
Col-BWT: Pangenomic Seed Chaining with Maximal Matches Improves Read ClassificationNathaniel K Brown, Vikram S Shivakumar, Ben LangmeadBiorxiv : the Preprint Server for Biology|March 3, 2025
EvANI benchmarking workflow for evolutionary distance estimationSina Majidian, Stephen Hwang, Mohsen Zakeri, et al.Iscience|February 16, 2024
DandD: Efficient measurement of sequence growth and similarityJessica K Bonnie, Omar Y Ahmed, Ben LangmeadACM-BCB ... ... : the ... ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine|April 13, 2026
Movi Color: fast and accurate taxonomic classification with the move structureSteven Tan, Sina Majidian, Ben Langmead, et al.Earth, Planets, and Space : EPS|November 1, 2021
Wave-particle interaction effects in the Van Allen beltsDaniel N BakerGenome Biology|February 10, 2023
REPAC: analysis of alternative polyadenylation from RNA-sequencing dataEddie L Imada, Christopher Wilks, Ben Langmead, et al.Biorxiv : the Preprint Server for Biology|November 24, 2025
Movi 2: Fast and Space-Efficient Queries on PangenomesMohsen Zakeri, Nathaniel K Brown, Travis Gagie, et al.Bioinformatics (Oxford, England)|June 18, 2026
Movi 2: Fast and Space-Efficient Queries on PangenomesMohsen Zakeri, Nathaniel K Brown, Travis Gagie, et al.Pageof 13