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Iscience|July 1, 2021
Pan-genomic matching statistics for targeted nanopore sequencingOmar Ahmed, Massimiliano Rossi, Sam Kovaka, et al.
Biostatistics (Oxford, England)|March 31, 2022
Two-stage linked component analysis for joint decomposition of multiple biologically related data setsHuan Chen, Brian Caffo, Genevieve Stein-O'Brien, et al.
Peerj|March 18, 2015
Arioc: high-throughput read alignment with GPU-accelerated exploration of the seed-and-extend search spaceRichard Wilton, Tamas Budavari, Ben Langmead, et al.
Nature Methods|November 30, 2023
Improved sequence mapping using a complete reference genome and lift-overNae-Chyun Chen, Luis F Paulin, Fritz J Sedlazeck, et al.
International Symposium on String Processing and Information Retrieval : SPIRE ... : Proceedings. SPIRE (Symposium)|December 15, 2025
Prefix-free parsing for merging big BWTsDiego Díaz-Domínguez, Travis Gagie, Veronica Guerrini, et al.
Bioinformatics (Oxford, England)|July 7, 2026
RLBWT-based LCP computation in compressed space for terabase-scale pangenome analysisAhsan Sanaullah, Nathaniel K Brown, Pramesh Shakya, et al.
Biorxiv : the Preprint Server for Biology|February 6, 2026
RLBWT-Based LCP Computation in Compressed Space for Terabase-Scale Pangenome AnalysisAhsan Sanaullah, Nathaniel K Brown, Pramesh Shakya, et al.
Algorithms for Molecular Biology : AMB|March 2, 2025
Mem-based pangenome indexing for k-mer queriesStephen Hwang, Nathaniel K Brown, Omar Y Ahmed, et al.
Proceedings. Data Compression Conference|November 15, 2021
PHONI: Streamed Matching Statistics with Multi-Genome ReferencesChristina Boucher, Travis Gagie, I Tomohiro, et al.
Biorxiv : the Preprint Server for Biology|June 3, 2024
MEM-based pangenome indexing for k-mer queriesStephen Hwang, Nathaniel K Brown, Omar Y Ahmed, et al.
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