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Biophysical Journal|June 21, 2017
Conditioning and Robustness of RNA Boltzmann Sampling under Thermodynamic Parameter PerturbationsEmily Rogers, David Murrugarra, Christine HeitschFrontiers in Neuroscience|November 29, 2016
Estimating Propensity Parameters Using Google PageRank and Genetic AlgorithmsDavid Murrugarra, Jacob Miller, Alex N MuellerNPJ Systems Biology and Applications|April 4, 2023
The nonlinearity of regulation in biological networksSantosh Manicka, Kathleen Johnson, Michael Levin, et al.Letters in Biomathematics|June 18, 2021
A Near-Optimal Control Method for Stochastic Boolean NetworksBoris Aguilar, Pan Fang, Reinhard Laubenbacher, et al.Bulletin of Mathematical Biology|January 11, 2020
Control of Intracellular Molecular Networks Using Algebraic MethodsLuis Sordo Vieira, Reinhard C Laubenbacher, David MurrugarraBMC Systems Biology|September 25, 2016
Identification of control targets in Boolean molecular network models via computational algebraDavid Murrugarra, Alan Veliz-Cuba, Boris Aguilar, et al.Bulletin of Mathematical Biology|September 30, 2010
A mathematical framework for agent based models of complex biological networksFranziska Hinkelmann, David Murrugarra, Abdul Salam Jarrah, et al.Journal of the Royal Society, Interface|October 25, 2023
Modularity of biological systems: a link between structure and functionClaus Kadelka, Matthew Wheeler, Alan Veliz-Cuba, et al.Comparative Biochemistry and Physiology. Toxicology & Pharmacology : CBP|November 7, 2017
Transcriptional correlates of proximal-distal identify and regeneration timing in axolotl limbsS Randal Voss, David Murrugarra, Tyler B Jensen, et al.Journal of Chemical Information and Modeling|September 17, 2025
When Does Additional Information Improve Accuracy of RNA Secondary Structure Prediction?Logan Rose, Luis Sanchez Giraldo, Duc Nguyen, et al.Pageof 3