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Microbiome|August 14, 2021
Metapangenomics reveals depth-dependent shifts in metabolic potential for the ubiquitous marine bacterial SAR324 lineageDominique Boeuf, John M Eppley, Daniel R Mende, et al.
Genome Research|April 10, 2013
Country-specific antibiotic use practices impact the human gut resistomeKristoffer Forslund, Shinichi Sunagawa, Jens Roat Kultima, et al.
Plos Computational Biology|March 5, 2026
Unique ecology of co-occurring functionally and phylogenetically undescribed species in the infant oral microbiomeNicholas Pucci, Amke Marije Kaan, Joanne Ujčič-Voortman, et al.
Current Protocols|August 13, 2021
mOTUs: Profiling Taxonomic Composition, Transcriptional Activity and Strain Populations of Microbial CommunitiesHans-Joachim Ruscheweyh, Alessio Milanese, Lucas Paoli, et al.
Nucleic Acids Research|January 6, 2017
proGenomes: a resource for consistent functional and taxonomic annotations of prokaryotic genomesDaniel R Mende, Ivica Letunic, Jaime Huerta-Cepas, et al.
Journal of Microbiological Methods|July 21, 2020
Thermus thermophilus DNA can be used as internal control for process monitoring of clinical metagenomic next-generation sequencing of urine samplesVictoria A Janes, Jennifer S van der Laan, Sébastien Matamoros, et al.
Plos One|March 3, 2012
Assessment of metagenomic assembly using simulated next generation sequencing dataDaniel R Mende, Alison S Waller, Shinichi Sunagawa, et al.
Frontiers in Microbiology|November 1, 2017
Isolation and Characterization of Bacteria That Degrade Phosphonates in Marine Dissolved Organic MatterOscar A Sosa, Daniel J Repeta, Sara Ferrón, et al.
Genome Biology|June 14, 2021
GUNC: detection of chimerism and contamination in prokaryotic genomesAskarbek Orakov, Anthony Fullam, Luis Pedro Coelho, et al.
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