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Microbiome|December 4, 2022
Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environmentsHans-Joachim Ruscheweyh, Alessio Milanese, Lucas Paoli, et al.The ISME Journal|October 9, 2020
Combined pigment and metatranscriptomic analysis reveals highly synchronized diel patterns of phenotypic light response across domains in the open oligotrophic oceanKevin W Becker, Matthew J Harke, Daniel R Mende, et al.Plos One|October 20, 2012
MOCAT: a metagenomics assembly and gene prediction toolkitJens Roat Kultima, Shinichi Sunagawa, Junhua Li, et al.Proceedings of the National Academy of Sciences of the United States of America|December 3, 2016
Siderophore-based microbial adaptations to iron scarcity across the eastern Pacific OceanRene M Boiteau, Daniel R Mende, Nicholas J Hawco, et al.Journal of Health, Population, and Nutrition|March 8, 2025
Dietary patterns in Tanzania's transitioning rural and urban areasLinda Simon Paulo, Virissa C Lenters, Pilly Chillo, et al.Nucleic Acids Research|November 13, 2018
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 virusesJaime Huerta-Cepas, Damian Szklarczyk, Davide Heller, et al.Nucleic Acids Research|November 20, 2015
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequencesJaime Huerta-Cepas, Damian Szklarczyk, Kristoffer Forslund, et al.Biorxiv : the Preprint Server for Biology|May 7, 2026
A bifidobacterial enzyme orchestrates ecology and function of infant gut bacterial communityYangwei Shan, Nicholas Pucci, Coen Berns, et al.Nucleic Acids Research|November 20, 2025
proGenomes4: providing 2 million accurately and consistently annotated high-quality prokaryotic genomesAnthony Fullam, Ivica Letunic, Oleksandr M Maistrenko, et al.Nature|December 11, 2012
Genomic variation landscape of the human gut microbiomeSiegfried Schloissnig, Manimozhiyan Arumugam, Shinichi Sunagawa, et al.Pageof 7