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Nucleic Acids Research|November 18, 2022
eggNOG 6.0: enabling comparative genomics across 12 535 organismsAna Hernández-Plaza, Damian Szklarczyk, Jorge Botas, et al.
The ISME Journal|February 13, 2020
Disentangling the impact of environmental and phylogenetic constraints on prokaryotic within-species diversityOleksandr M Maistrenko, Daniel R Mende, Mechthild Luetge, et al.
Nucleic Acids Research|January 17, 2016
Integration of multi-omics data of a genome-reduced bacterium: Prevalence of post-transcriptional regulation and its correlation with protein abundancesWei-Hua Chen, Vera van Noort, Maria Lluch-Senar, et al.
Proceedings of the National Academy of Sciences of the United States of America|October 3, 2012
Role for urea in nitrification by polar marine ArchaeaLaura Alonso-Sáez, Alison S Waller, Daniel R Mende, et al.
Central Asian Journal of Global Health|May 29, 2018
Individuality and temporal stability of the human gut microbiomeShinichi Sunagawa, Siegfried Schloissnig, Manimozhiyan Arumugam, et al.
Medrxiv : the Preprint Server for Health Sciences|June 4, 2026
The Burden and Genomic Characterization of Shigella -Associated Diarrhea in Children Under Five in Lusaka, Zambia: A Prospective Cohort StudyMwelwa Chibuye, Vanessa C Harris, Jaime Brizuela, et al.
Nucleic Acids Research|October 25, 2019
proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomesDaniel R Mende, Ivica Letunic, Oleksandr M Maistrenko, et al.
Nucleic Acids Research|October 28, 2023
SPIRE: a Searchable, Planetary-scale mIcrobiome REsourceThomas S B Schmidt, Anthony Fullam, Pamela Ferretti, et al.
Nature Communications|March 6, 2019
Microbial abundance, activity and population genomic profiling with mOTUs2Alessio Milanese, Daniel R Mende, Lucas Paoli, et al.
The Lancet. Microbe|June 10, 2022
Metagenomic DNA sequencing for semi-quantitative pathogen detection from urine: a prospective, laboratory-based, proof-of-concept studyVictoria A Janes, Sébastien Matamoros, Patrick Munk, et al.
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