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Protein Science : a Publication of the Protein Society|November 1, 2006
Catalytic mechanism of cyclophilin as observed in molecular dynamics simulations: pathway prediction and reconciliation of X-ray crystallographic and NMR solution dataDaniel Trzesniak, Wilfred F van GunsterenChemphyschem : a European Journal of Chemical Physics and Physical Chemistry|November 30, 2006
A comparison of methods to compute the potential of mean forceDaniel Trzesniak, Anna-Pitschna E Kunz, Wilfred F van GunsterenPhysical Chemistry Chemical Physics : PCCP|March 13, 2009
On using a too large integration time step in molecular dynamics simulations of coarse-grained molecular modelsMoritz Winger, Daniel Trzesniak, Riccardo Baron, et al.Proteins|August 19, 2006
Protein under pressure: molecular dynamics simulation of the arc repressorDaniel Trzesniak, Roberto D Lins, Wilfred F van GunsterenJournal of the American Chemical Society|October 13, 2005
Interpreting NMR data for beta-peptides using molecular dynamics simulationsDaniel Trzesniak, Alice Glättli, Bernhard Jaun, et al.Biopolymers|September 13, 2006
Simulation of an all-beta 3-icosapeptide containing the 20 proteinogenic side chains: effect of temperature, pH, counterions, solvent, and force field on helix stabilityDaniel Trzesniak, Bernhard Jaun, Raveendra I Mathad, et al.The Journal of Physical Chemistry. B|June 30, 2006
Enthalpy-entropy compensation in the effects of urea on hydrophobic interactionsNico F A van der Vegt, Maeng-Eun Lee, Daniel Trzesniak, et al.Journal of the American Chemical Society|November 7, 2009
Exact distances and internal dynamics of perdeuterated ubiquitin from NOE buildupsBeat Vögeli, Takuya F Segawa, Dominik Leitz, et al.Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry|February 10, 2007
Comparison of thermodynamic properties of coarse-grained and atomic-level simulation modelsRiccardo Baron, Daniel Trzesniak, Alex H de Vries, et al.Journal of Computational Chemistry|October 8, 2005
The GROMOS software for biomolecular simulation: GROMOS05Markus Christen, Philippe H Hünenberger, Dirk Bakowies, et al.Pageof 2