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Biorxiv : the Preprint Server for Biology|March 18, 2026
CAPHEINE, or everything and the kitchen sink: a workflow for automating selection analyses using HyPhyHannah Elaine Verdonk, Danielle Callan, Sergei L Kosakovsky PondBiorxiv : the Preprint Server for Biology|April 17, 2026
Beyond Invariable Sites: Using Evolutionary Stasis to Map Multi-Layered Constraints on the Evolution of Viral and Mammalian GenomesSergei L Kosakovsky Pond, Hannah Verdonk, Steven Weaver, et al.Biorxiv : the Preprint Server for Biology|November 24, 2025
From data to publication in a browser with BRC-Analytics: Evolutionary dynamics of coding overlaps in measles virusAnton Nekrutenko, Danielle Callan, Marius Van Den Beek, et al.Biorxiv : the Preprint Server for Biology|January 9, 2026
Standardizing RNA-seq Analysis of Fungal Pathogens Using BRC-Analytics and Agentic AI: A <i>Candidozyma auris</i> Case StudyAnton Nekrutenko, Danielle Callan, Marius Van Den Beek, et al.Nucleic Acids Research|November 12, 2023
VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center in 2023Jorge Alvarez-Jarreta, Beatrice Amos, Cristina Aurrecoechea, et al.Nucleic Acids Research|October 31, 2021
VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource centerBeatrice Amos, Cristina Aurrecoechea, Matthieu Barba, et al.Pageof 1