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Mathematical Biosciences|March 19, 2018
Numerical schemes for solving and optimizing multiscale models with age of hepatitis C virus dynamicsVladimir Reinharz, Harel Dahari, Danny BarashMethods in Molecular Biology (Clifton, N.J.)|January 12, 2015
Free energy minimization to predict RNA secondary structures and computational RNA designAlexander Churkin, Lina Weinbrand, Danny BarashPlos One|September 6, 2017
Comparative genomics and phylogenomic analyses of lysine riboswitch distributions in bacteriaSumit Mukherjee, Danny Barash, Supratim SenguptaBMC Bioinformatics|August 5, 2011
RNAexinv: An extended inverse RNA folding from shape and physical attributes to sequencesAssaf Avihoo, Alexander Churkin, Danny BarashBMC Bioinformatics|October 14, 2022
IndelsRNAmute: predicting deleterious multiple point substitutions and indels mutationsAlexander Churkin, Yann Ponty, Danny BarashMethods in Molecular Biology (Clifton, N.J.)|September 23, 2024
RNA Design Using incaRNAfbinv Demonstrated with the Identification of Functional RNA Motifs in Hepatitis Delta VirusRami Zakh, Alexander Churkin, Danny BarashBioinformatics (Oxford, England)|August 27, 2013
RNAfbinv: an interactive Java application for fragment-based design of RNA sequencesLina Weinbrand, Assaf Avihoo, Danny BarashMethods in Molecular Biology (Clifton, N.J.)|September 23, 2024
A Computational Approach for Designing Synthetic Riboswitches for Next-Generation RNA TherapeuticsSumit Mukherjee, Sunanda Biswas Mukherjee, Danny BarashBiopolymers|May 27, 2003
Sequence-dependent solution structure and motions of 13 TATA/TBP (TATA-box binding protein) complexesDaniel Strahs, Danny Barash, Xiaoliang Qian, et al.Algorithms for Molecular Biology : AMB|September 11, 2012
Efficient procedures for the numerical simulation of mid-size RNA kineticsIddo Aviram, Ilia Veltman, Alexander Churkin, et al.Pageof 9