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Frontiers in Applied Mathematics and Statistics|March 12, 2019
A Robust and Efficient Numerical Method for RNA-Mediated Viral DynamicsVladimir Reinharz, Alexander Churkin, Harel Dahari, et al.Journal of Computational Chemistry|December 17, 2002
Inherent speedup limitations in multiple time step/particle mesh Ewald algorithmsDanny Barash, Linjing Yang, Xiaoliang Qian, et al.In Silico Biology|March 9, 2005
STR2: a structure to string approach for locating G-box riboswitch shapes in pre-selected genesOriel Bergig, Danny Barash, Evgeny Nudler, et al.Mathematics (Basel, Switzerland)|October 17, 2022
Advances in Parameter Estimation and Learning from Data for Mathematical Models of Hepatitis C Viral KineticsVladimir Reinharz, Alexander Churkin, Harel Dahari, et al.Plos One|April 11, 2014
RNAthermsw: direct temperature simulations for predicting the location of RNA thermometersAlexander Churkin, Assaf Avihoo, Michal Shapira, et al.Briefings in Bioinformatics|June 19, 2026
RNA design: update on computational frameworks and programs for inverse RNA foldingSumit Mukherjee, Rami Zakh, Alexander Churkin, et al.G3 (Bethesda, Md.)|August 13, 2017
Intricate and Cell Type-Specific Populations of Endogenous Circular DNA (eccDNA) in <i>Caenorhabditis elegans</i> and <i>Homo sapiens</i>Massa J Shoura, Idan Gabdank, Loren Hansen, et al.Journal of Bioinformatics and Computational Biology|December 2, 2010
Bioinformatic analysis of the neutrality of RNA secondary structure elements across genotypes reveals evidence for direct evolution of genetic robustness in HCVAlexander Churkin, Moriah Cohen, Yonat Shemer-Avni, et al.Scientific Reports|April 5, 2018
Phylogenomic and comparative analysis of the distribution and regulatory patterns of TPP riboswitches in fungiSumit Mukherjee, Matan Drory Retwitzer, Danny Barash, et al.AIP Conference Proceedings|December 22, 2020
HCVMultiscaleFit: A Simulator For Parameter Estimation in Multiscale Models Of Hepatitis C Virus DynamicsAlexander Churkin, Vladimir Reinharz, Stephanie Lewkiewicz, et al.Pageof 9